BIOINFORMATICS · COMPUTATIONAL BIOLOGY · ONCOLOGY
Bioinformatics Tools
Designed for Researchers
Explore free, browser-based bioinformatics tools for gene analysis, protein structure, sequence analysis, drug discovery, network pharmacology, NGS quality control, and cancer research.
Built for students, researchers, and scientists without expensive software or complicated installations.
Free Bioinformatics Tools
15+ browser-based tools: ADMET prediction, gel electrophoresis, Ramachandran plots, gene/protein/pathway lookups, target prediction, and more. No installs, no paywall.
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Available Web Tools & Databases
133+ free and open-source bioinformatics databases and tools, curated and organized by research area. One place to find everything.
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About Me
Oncology bioinformatics researcher, University Gold Medalist. Research background, selected projects, skills, and how to reach me for collaborations or PhD opportunities.
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Free Bioinformatics Tools, No Login Required
PradeepBio hosts 16 browser-based bioinformatics tools built on free, public APIs with no registration, no cost, no software to install. Each tool runs directly in your browser and is designed for researchers, students, and clinicians who need quick, reliable answers without paid subscriptions.
Gene & Literature
Resolve gene IDs across Entrez, Ensembl, UniProt, and HGNC. Search PubMed and NCBI GEO expression datasets by keyword.
Protein & Pathway
Map proteins to UniProt, AlphaFold, and PDB structures. Explore Reactome pathways, STRING interaction networks, and tissue expression from the Human Protein Atlas.
Drug Discovery
Predict 119 ADMET properties from SMILES via ADMETlab 3.0. Identify likely protein targets for any compound using PubChem similarity and ChEMBL bioactivity data.
Structure Validation
Generate publication-ready Ramachandran plots from any PDB ID or AlphaFold model. Classify residues as favored, allowed, or outlier with % statistics matching MolProbity standards.
Sequence Tools
Calculate primer Tm and GC content, download FASTA sequences from NCBI or UniProt, and fetch any human reference genome region by chromosome coordinates.
Lab & NGS
Simulate agarose and SDS-PAGE gel electrophoresis with exportable PNG output. Run NGS read QC on FASTQ files entirely in your browser, keeping your data private and secure.
Bioinformatics Databases & Web Tools Directory
The Resources directory is a curated, searchable index of 133+ free and open-source bioinformatics databases and web tools, organized by research area. It covers genomics, proteomics, drug discovery, cancer bioinformatics, NGS workflows, structural biology, phylogenetics, metabolomics, microbiology, and more. All resources are free to access.
🧬 Genomics
NCBI, Ensembl, gnomAD, ClinVar, UCSC Genome Browser
🧱 Proteomics
UniProt, AlphaFold DB, RCSB PDB, STRING, InterPro
💊 Drug Discovery
ChEMBL, PubChem, DrugBank, BindingDB, Open Targets
🎗️ Cancer
cBioPortal, TCGA, COSMIC, GEPIA2, UALCAN, DepMap
🧪 NGS & Sequencing
FastQC, GATK, BWA, SRA, IGV, Galaxy
📚 Literature
PubMed, Europe PMC, OpenAlex, bioRxiv, Zotero
About PradeepBio
PradeepBio is a bioinformatics and cancer research initiative focused on making scientific analysis more accessible through free tools, curated resources, and applied research. Areas of focus include genomics, proteomics, drug discovery, network pharmacology, and translational oncology. The platform supports researchers, students, and clinicians with practical bioinformatics workflows, open scientific resources, and browser-based tools designed for modern life science research.
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