BIOINFORMATICS · COMPUTATIONAL BIOLOGY · ONCOLOGY
Bioinformatics Tools
Designed for Researchers
Explore free, browser-based bioinformatics tools for gene analysis, protein structure, sequence analysis, drug discovery, network pharmacology, NGS quality control, and cancer research.
Built for students, researchers, and scientists without expensive software or complicated installations.
Free Bioinformatics Tools
16 browser-based tools — ADMET prediction, gel electrophoresis, Ramachandran plots, gene/protein/pathway lookups, target prediction, and more. No installs, no paywall.
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Available Web Tools & Databases
117+ free and open-source bioinformatics databases and tools, curated and organized by research area. One place to find everything.
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About Me
Oncology bioinformatics researcher, University Gold Medalist. Research background, selected projects, skills, and how to reach me for collaborations or PhD opportunities.
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Free Bioinformatics Tools — No Login Required
PradeepBio hosts 16 browser-based bioinformatics tools built on free, public APIs — no registration, no cost, no software to install. Each tool runs directly in your browser and is designed for researchers, students, and clinicians who need quick, reliable answers without paid subscriptions.
Gene & Literature
Resolve gene IDs across Entrez, Ensembl, UniProt, and HGNC. Search PubMed and NCBI GEO expression datasets by keyword.
Protein & Pathway
Map proteins to UniProt, AlphaFold, and PDB structures. Explore Reactome pathways, STRING interaction networks, and tissue expression from the Human Protein Atlas.
Drug Discovery
Predict 119 ADMET properties from SMILES via ADMETlab 3.0. Identify likely protein targets for any compound using PubChem similarity and ChEMBL bioactivity data.
Structure Validation
Generate publication-ready Ramachandran plots from any PDB ID or AlphaFold model. Classify residues as favored, allowed, or outlier with % statistics matching MolProbity standards.
Sequence Tools
Calculate primer Tm and GC content, download FASTA sequences from NCBI or UniProt, and fetch any human reference genome region by chromosome coordinates.
Lab & NGS
Simulate agarose and SDS-PAGE gel electrophoresis with exportable PNG output. Run NGS read QC on FASTQ files entirely in your browser — no upload required.
Bioinformatics Databases & Web Tools Directory
The Resources directory is a curated, searchable index of 117+ free and open-source bioinformatics databases and web tools, organized by research area. It covers genomics, proteomics, drug discovery, cancer bioinformatics, NGS workflows, structural biology, phylogenetics, metabolomics, microbiology, and more — all free and openly accessible.
🧬 Genomics
NCBI, Ensembl, gnomAD, ClinVar, UCSC Genome Browser
🧱 Proteomics
UniProt, AlphaFold DB, RCSB PDB, STRING, InterPro
💊 Drug Discovery
ChEMBL, PubChem, DrugBank, BindingDB, Open Targets
🎗️ Cancer
cBioPortal, TCGA, COSMIC, GEPIA2, UALCAN, DepMap
🧪 NGS & Sequencing
FastQC, GATK, BWA, SRA, IGV, Galaxy
📚 Literature
PubMed, Europe PMC, OpenAlex, bioRxiv, Zotero
About the Researcher
I'm Pradeep, an oncology bioinformatics researcher with an MSc in Cancer Biology and a University Gold Medal. My research spans molecular docking, network pharmacology, clinical biobanking operations, and translational data analysis — with a focus on turning raw genomics and proteomics data into clinically meaningful insights.
This site combines my research portfolio with a set of freely available tools and resources I built for the broader scientific community. I'm open to funded PhD programs and research collaborations, particularly in Germany and Japan.
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