About
From the bench to the dashboard
My work sits at the intersection of clinical laboratory science and computational biology. I began in biobanking operations, running clinical sample processing workflows including PBMC extraction and plasma separation for translational cancer research cohorts — work that gave me a rigorous, hands-on understanding of sample integrity and data provenance long before I wrote a line of analysis code.
That foundation shapes how I approach bioinformatics today: I build oncology research pipelines that are traceable back to the realities of clinical sample handling. My computational toolkit includes molecular docking and network pharmacology workflows to explore drug–target interactions, NGS pipelines for variant calling and gene expression analysis, alongside Power BI and Streamlit dashboards that make cohort-level findings legible to clinicians and principal investigators alike.
I also believe good research tools shouldn't sit behind a paywall. That belief is why this site is more than a portfolio — alongside my project write-ups below, I design and build free bioinformatics tools and maintain a curated directory of free research resources, end to end: from the Next.js and TypeScript front end, to the API integrations behind each tool, to the data and content itself. It's a working demonstration of the same rigor I bring to research — applied to something anyone can use for free.
I hold an MSc in Cancer Biology (Cellular and Molecular Oncology) and was recognized as a University Gold Medalist for academic performance. I'm open to fully funded PhD opportunities and research or biotech roles — with particular interest in Germany and Japan — alongside continuing to grow PradeepBio as a free resource for the wider research community.
Projects
Selected Work
PradeepBio.com — Portfolio, Tools & Resources Platform
This site: a Next.js + TypeScript platform combining my research portfolio with a free bioinformatics tools hub and a curated resources directory, built end to end and deployed on Vercel.
A cBioPortal TCGA dashboard for real-world cancer mutation analysis and genomic visualization, built on live REST APIs.
A dashboard exploring cancer drugs, therapeutic targets, and precision medicine insights.
Biobank Research Data Dashboard
Dashboards for sample tracking and clinical insights using DAX, data modeling, and KPI monitoring.
Python Automation Tools
Python scripts that automate data processing, reporting, and routine research workflows.
Skills
Technical Toolkit
Oncology Research Pipelines
Design and execution of end-to-end computational pipelines for cancer genomics and translational oncology datasets.
NGS & Variant Analysis
FastQC, alignment, and variant calling pipelines, plus gene expression analysis for oncology applications.
Molecular Docking
In-silico modeling of ligand-protein binding interactions to support early-stage drug discovery workflows.
Network Pharmacology
Mapping compound-target-pathway networks to identify multi-target mechanisms of action in disease models.
Power BI & Streamlit
Building interactive dashboards for cohort analysis, enabling researchers and clinicians to explore data visually.
Biobanking & Sample Ops
Clinical sample processing including PBMC extraction and plasma separation, with strict chain-of-custody standards.
Full-Stack Web Development
Designing and building this platform itself with Next.js, TypeScript, and Tailwind CSS — including live API integrations that power the free tools hub.
Contact
Let's Work Together
Open to fully funded PhD opportunities, research collaborations, and biotech roles — particularly in Germany and Japan. Reach out below or email me directly.